PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103610.1
Common NameCsa_6G497100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 276aa    MW: 30851.8 Da    PI: 8.1376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-1292138455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +      K +Ka+iL  A++++k+Lq
  Cucsa.103610.1  92 EHVIAERKRREKLSQRFIALSALIPDL-----NKADKASILGGAIRHVKELQ 138
                     599***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.53288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-992138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1592148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.62E-1293142No hitNo description
SuperFamilySSF474593.79E-1593154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1494143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
DALQFDDLYD LPVLPYAVEE RPAKRVKVEE DVEAGGGGIN KCKTTFVGNN HKGDSSLSSS  60
QIISFENNWN YESVKNWNCT NGKRSCSMNG REHVIAERKR REKLSQRFIA LSALIPDLNK  120
ADKASILGGA IRHVKELQER LKVVEEQTTS KTSKPQSPVV CVKRTTLQPS SSDDDTSSSD  180
ENSFSGRLRS TPEIEVRFVN NDVLIRIHCH KRKGCLSYLL NKIQSFNNLT ILNTSALPFS  240
HSNLDITIVA QMDVGFHMTV EDVVKNLRQA LLDFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101ERKRRE
297102RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-178LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-178LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440466.11e-157PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0A0KIM80.0A0A0A0KIM8_CUCSA; Uncharacterized protein
STRINGSolyc01g106460.2.15e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.17e-45bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]